Scaffold Ga0209118_1001133

Overview

Basic Information

• Taxon OID: 3300027674
• Scaffold ID: Ga0209118_1001133
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12960
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004193	Metagenome / Metatranscriptome	449	Y
F012131	Metagenome / Metatranscriptome	283	Y
F047786	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209118_10011335	F012131	AGG	MRVYCMRHQSTGSRCTIMAAAIPKADILNLEDYNMHRADRYVASLFLTAALAAPVSVMAVPVPQESRVQVRVYDKQHKDYHNWDDNENRAWGQYLTENHKSSHEFSKASRREKSQYWNYRHAHPDKN
Ga0209118_10011336	F004193	AGGGGG	MPSFPVPKGRRSTRVTSKRRGSLVINLDRNQRRLPCLLLDSSKEGFRLRGFFHLRRGEVVELILDEDPLSSERCSVVWVGKAGSKQDGEVGLETA
Ga0209118_10011337	F047786	GAG	MNIDFKPGDVVRSKSGGQDIIIIRLEDESVAGVTKKLAYCGRFDGQNFHQETIPLDMLEFVNREFRF