Scaffold Ga0209118

Basic Information
Taxon OID	3300027674 Open in IMG/M
Scaffold ID	Ga0209118_1000202 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027674 Open in IMG/M

Scaffold ID

Ga0209118_1000202 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38632
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (87.76%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

38632

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (87.76%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F000673	Metagenome / Metatranscriptome	944	Y
F002076	Metagenome / Metatranscriptome	596	Y
F007329	Metagenome / Metatranscriptome	353	Y
F015234	Metagenome / Metatranscriptome	256	Y
F066961	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209118_100020221	F007329	AGGAGG	MKKLSVLALALLVGTLGIPVLAHGMRQETTQDDKKPPLMNIKGTVKADGDKITFVADDGGKSWDVMNPETLKDHVGHHVELSAHVYKDKGQIHVMKVTML
Ga0209118_100020223	F066961	AGGAG	MQTVTDSFSHVLLFACPQCGSPLASACASTKKNLEGADAHWFNPHCHCGWTGPVIGVQAVKHWVEPWKTPVKIGPDAPGSCDGEPLT
Ga0209118_100020245	F000321	AGTAGG	VPKRRSVHFGVYNVRLLSTLDKLLRDKPRYMGELSTSINDALLAVNLNTVELVKLQSRQKQTGRETQVVILRRLRKRIHQVAKKRNCSMNQLVNSALLAYYSKAGESKLKRPTKGLGPSMHSYDTMSELERRELHQMLAELSAMQSVPLEAEEPNGTYYEYDRNLKATVKVTPDGERTPVEKLEKSFEPTRRKGPRSIAHEEITT
Ga0209118_100020247	F002076	AGAAGG	MQKDYRPCLEKLAGAPPKRKAALIRSLLPGIEVALHSGQSLKDIWEALGNEGLQMTYHVFHMTVWRARKTRKPTATSSWGKQDKPSESQGLQEAKVETVEGRDPFANLRRLEEDRPGFRWRGTRSLETLVRGTEGTNDKNKR
Ga0209118_100020249	F000673	AGGA	MAKPRIERSLLFPNKEFRERVRKASKDRGFRSEQAFILAACEREIRRGDDTESVTQFEARIAATLTNLAKQGQHLQTLVEAQVAITDVLLKYVITCVVEPPEDALPAARVRARLRYDKLIRAAAKELSNKN
Ga0209118_10002026	F015234	GGGGG	MGAKFDIFKKLPDGYPLWVKAVDGLEEARAQLARLAASSPGEYFIYSVQNGCVIQARLASGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209118_1000202

Overview

Ecosystem & Geography

Associated Families

Sequences