Scaffold Ga0209118

Basic Information
Taxon OID	3300027674 Open in IMG/M
Scaffold ID	Ga0209118_1000024 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027674 Open in IMG/M

Scaffold ID

Ga0209118_1000024 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	120377
Total Scaffold Genes	106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	87 (82.08%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

120377

Total Scaffold Genes

106 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

87 (82.08%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000192	Metagenome / Metatranscriptome	1666	Y
F000465	Metagenome / Metatranscriptome	1105	Y
F013105	Metagenome / Metatranscriptome	274	Y
F044614	Metagenome / Metatranscriptome	154	Y
F083090	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209118_100002425	F013105	N/A	MKLWGYVASCLFAVALLSQAVQGQQPPEPRKLTNNSSNAIASTPDFGAIANGVYHNTAFGFTCKIPYGWVDRTPEISEDPSPDSNARKKSILLLAVFERPPEASGDSVNSAVVVAAEAASSYPGLRNAEHYFGPLTELTKSKGLKVVNEPYDYSMGAMQLVRGDFSKPLGNLTMHQSTLVMMEKGYVVSFTFIGGSEDEVDELVEGLSFGRKETPAPHK
Ga0209118_100002434	F044614	N/A	MPKPLILVLMIALPGAAVFAPITMAQMRAPSLTMPGAVAPSGFGRSVGISFAGRPHSHSFDRGAIFLGDPFYADYRVEPLAAPTAPPQVIIVQPATADTPPETKSEPLMIELRGNRYVRFGGRQQSAERGMSAAPDYAEAEAANSSRVAQPPAQPELSPTVLIFRDGHREQVPEYAIVGSILYASADYWQSGHWTKNIQLSALNIPATVRANHDNGVKFILPSAPNEVVVGP
Ga0209118_100002439	F000465	GGAG	MKAVAIRKGQSLEKGADSREMGTLRCEGCGEEFFIGNDPPFVDKWLAERQAHWLEKVLAERRERDKKHPDRIELPD
Ga0209118_100002456	F000192	AGGAGG	MAANQVVLYFDKQEDALLFTLAASSVMSAEGSVHSSDAVVKVAEEISKASRITTEGVLSS
Ga0209118_100002495	F083090	N/A	MPDWKQIVRKNLRVLGVCSPEFTEELAAHLEDSYEAFLREGLPAEVAFQHTMGQIEGRRRVWLVMRFLQEELMTGFIRKVALPGLLTSVAAGFFYWALALDHTPPKLIWLVGGQLPLWWWCLLPICGALGALLSQRNRGSRLQRIAASLLPSWVMGTFILLMFAVGFTFSGLVNHYWSLSDRLESMGLVPPGFVIIPAAFSLLGAGIAEVSTKKSAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209118_1000024

Overview

Ecosystem & Geography

Associated Families

Sequences