Scaffold Ga0209118

Basic Information
Taxon OID	3300027674 Open in IMG/M
Scaffold ID	Ga0209118_1000018 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027674 Open in IMG/M

Scaffold ID

Ga0209118_1000018 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	134369
Total Scaffold Genes	117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	98 (83.76%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

134369

Total Scaffold Genes

117 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

98 (83.76%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F000174	Metagenome / Metatranscriptome	1764	Y
F004611	Metagenome / Metatranscriptome	431	Y
F010853	Metagenome / Metatranscriptome	298	Y
F065983	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209118_100001810	F010853	AGGAG	MLQCSIICNMTKSPFSKKEQIMTSTSKSTKKAAAAVNPEFVDSFSPLVLNSVERVADMQKKTLDITAEQTAEWIGSWKKALSYFPVTPLAFIFDVAGQAVQTAIETQKSAVDLVVEQSKAATGIAKVRAEAYSKIADGVTTTMQKSVERSMEAQKTILEFVSEQNKAVFESTKKQFGATAGPATVIVDRFQRGAHAVIEAQKSFLNIVSQPFATAKS
Ga0209118_100001813	F065983	GAG	MKKKRLTAQQVRTQKRRRAHNRKHTLLRRECYKWLRKNLPDVYAKLRKKAGLVRTGRPKG
Ga0209118_100001828	F004611	GGAG	MAEGCGRFETGVKPLYKCGEAIFVPESRPNSRRWTVIASGLLCCGLGVVVMYTRRSAFVSPLAVVVVAAIGLAAVLLQLRYYNREHSNPVHAPVWLNMVGVLFALTALLSDLLGLSSQMAQVMALGAVGSFAISGGLILHAFRKQRTTSK
Ga0209118_100001830	F000174	GAGG	MKNVYEVLRQKELELARLEKEVEALRVAAPLLSDDKDSMLEASSNKPTLATPTTAQQPIRIPQAAVNASPQPARAAGWEDTAKRWP
Ga0209118_100001833	F000151	GGAGG	MQYGANGSNGTGNGTLLRNEDSHVQEVVKTAHEELRHLMRQRAEIMKRIGTLKQTISGLANLFGDDILGDDLLELVDRKTGGRQPGFTKACRMVLMEAGRPLAVREVCEQIQQRLPAVLLRHKDPLASVTTVLNRLVEYGEALSLVRENGRRAWQWVSDPAPVERASAASAPLSQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209118_1000018

Overview

Ecosystem & Geography

Associated Families

Sequences