NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209383_1000258

Scaffold Ga0209383_1000258


Overview

Basic Information
Taxon OID3300027672 Open in IMG/M
Scaffold IDGa0209383_1000258 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38586
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025783Metagenome / Metatranscriptome200Y
F041866Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209383_100025814F025783AGGMIPKNFEYLDSFVLPRELEQSKRALTEHITEVNRYKYFLKLKVRRDTKDHITMVPTDFPMQRAIYDLVYKAPDGKQQHFKIGCTQKLYQRIGRNYLQGSGANTGWLAPAMHEFLKEFGGEFEIYTRAFDDKITQMDDDIEVDYTPRLDTIEKMYQDKLNIKDGKKAVQEFFILNNFSYII
Ga0209383_100025858F041866N/AMILLQLHHMWYESNIIEECWDSIYRAIKSAPAVEVKIKICYNEQTYIEKPKHASPRDFFNKFETHRLMQEFNPELTIKTDKDPFYNIADWRREIYDVDAKYTVWGESDCLMPRDFFAVLGALQVPVKHVVTFASRPMWDNSWDIVTHDKLQGYSKPCQCTSDHREDCIELLEAPLKYKDYISQKELDKFNDEAGDINIKQVPLKIDGSLVCISSGFDTPFIAPGMHFVREDTCFEEYCRKKEIIQLCVTSRLKGHNYKHPSKRIGTDATRNDQVFKDYQTASIAAMSKFLTEL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.