Scaffold Ga0209383_1000258

Overview

Basic Information

• Taxon OID: 3300027672
• Scaffold ID: Ga0209383_1000258
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38586
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (30.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025783	Metagenome / Metatranscriptome	200	Y
F041866	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209383_100025814	F025783	AGG	MIPKNFEYLDSFVLPRELEQSKRALTEHITEVNRYKYFLKLKVRRDTKDHITMVPTDFPMQRAIYDLVYKAPDGKQQHFKIGCTQKLYQRIGRNYLQGSGANTGWLAPAMHEFLKEFGGEFEIYTRAFDDKITQMDDDIEVDYTPRLDTIEKMYQDKLNIKDGKKAVQEFFILNNFSYII
Ga0209383_100025858	F041866	N/A	MILLQLHHMWYESNIIEECWDSIYRAIKSAPAVEVKIKICYNEQTYIEKPKHASPRDFFNKFETHRLMQEFNPELTIKTDKDPFYNIADWRREIYDVDAKYTVWGESDCLMPRDFFAVLGALQVPVKHVVTFASRPMWDNSWDIVTHDKLQGYSKPCQCTSDHREDCIELLEAPLKYKDYISQKELDKFNDEAGDINIKQVPLKIDGSLVCISSGFDTPFIAPGMHFVREDTCFEEYCRKKEIIQLCVTSRLKGHNYKHPSKRIGTDATRNDQVFKDYQTASIAAMSKFLTEL