Scaffold Ga0209588_1004420

Overview

Basic Information

• Taxon OID: 3300027671
• Scaffold ID: Ga0209588_1004420
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3960
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004922	Metagenome / Metatranscriptome	418	Y
F016134	Metagenome	249	Y
F053955	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209588_10044202	F016134	GAG	LQDRSSEAAQFLKSKVEGKMKTKGTQLQIEGAKTKEVKLLLHKFLHHQGLNHYRVLSQSGVLEVTPPEKHVVHEPERVGSSPTAPQTTPYYFPQTPVLTPEKKKKAKPKHKHE
Ga0209588_10044206	F053955	GGAGG	MQTWNRTGQTRVTTIELALTSTLAAVYIVSAFFALTPFIGGPGFITLEIVMLPIIAFLLRPILATVAVLVGSIGSAFLQTGFYSTFGFAGLLIPLLAVALGSIAFHYEWGAIIPWGYVLAGAVYYFIFSKGGTLFWLAPYILVIASLPAALRVRDPYRLGLLALYTAMSEQVTLNVLSISLLNLTGAFWTGVTPLMFLERTIATLGGFAGIVALKSRLGTRLELGHVLREVK
Ga0209588_10044207	F004922	GGAGG	MCVTAVVKCWHCGEWFAKQADRGEFENCPFCGKGFEQLSDEAQRAVKATLAPFFEVPHLKERPLTA