Scaffold Ga0209588_1001989

Overview

Basic Information

• Taxon OID: 3300027671
• Scaffold ID: Ga0209588_1001989
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5492
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010345	Metagenome / Metatranscriptome	305	Y
F021735	Metagenome	217	Y
F045043	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209588_10019892	F045043	N/A	MHGVRMRVLVPRSPDELAAHLRNSGACLVISRLSGGSAEVLSVLALEGGRVVELPGPPCAGVPRLVRDPALNAALGDPLGHARAQAPGDDLVFQIILSPRLQETAQAALRARFGAIGDEEMGRRAAESGYELTCFAEPAGPLRCE
Ga0209588_10019896	F010345	AGGAGG	MGLFARFWQYSIDTYGGAPMLLLINLIQIAVLGWVVSQALRAQMEVAGISPDARRIRAARRAEIWQKQVRPIALTMMLLGPGLGLGMSTLLGALGMGALGDAMGTQAGAEALAATMARAYREISYAYFLMVGGTFPMLLGPVIVLVARRLDEGGIDARGGDPDEVLLHTLKSLLAVTEAQARRAQVDAARTHTLLAETAAAIQRGEAA
Ga0209588_10019897	F021735	GGAG	MSADEMLALLRDRRRSAPGERSTPSVSLPLRIQPARASALGWLPEPFALTLLVANGTFRQEDGALLPGRGGPVVAICAEYERPLTSLGPPALATYSLARARLQGMPTLRLAGGWFSGPLRLETTHRAARAASHRDEAVARAARFFEELKAAWHRRLGAVLEVAWPVYAPEHPGPLLDAVAGTTLPELQL