Scaffold Ga0209588

Basic Information
Taxon OID	3300027671 Open in IMG/M
Scaffold ID	Ga0209588_1000238 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209588_1000238 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14657
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14657

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F006466	Metagenome	372	Y
F013280	Metagenome / Metatranscriptome	272	Y
F014110	Metagenome / Metatranscriptome	265	Y
F075877	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209588_100023810	F075877	AGGA	LGIGNGDGFDVLDSKEEERVLHRIENRGSFNTLDLTIQLHYSVNDSRQHRVHEDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIRLIVQELNVELARDRYGQIELEAVDVT
Ga0209588_100023813	F013280	N/A	LNTIKLLFLSGIAYALLLILVRGVFPSESTPTISLTGVPLIVILVMIARDLARKSTSPTVRRTSPTTSSFRGSPVQFLSGQFRVATDASNSYFENVVRARLRELLTAKVALETGQESETVRRILLDPREGPQLLEDDSLYRMLYGPTPRSGLVRINLISEAIDFIGAWKG
Ga0209588_100023816	F006466	N/A	LLLLIVWGKVARDLYGLPGPDSALLLLQFMLVIFLMEASTTTLTFDYTIKQIEGKDDDLSTLARMRVTKWRRVQLLNLGKLTIASFGLTLGLLILGSLVSVSVNQIAFSAILVLAAFVAI
Ga0209588_10002385	F006299	AGAAGG	LTVLAEVVSKETPEVVEFNQLKARTTSEALTELANEFGIVYVTALTRQGCSGCETQKPLFKTLAEKLTRENADKVRFRSLQVNYHDGDKRESWNAKRIFGHAAYPTYTIHVRSHVGPLEIYRAVYPPMEELEKQIRESFELAEFYKTEAQAALGTKI
Ga0209588_10002386	F014110	GGA	LVDFLREHVKDLKGRVLTKGNQIQVEGVKHKQVRLFLHKFLRHAGLDDHRVLSQSGILEIVPPPVTTHPRREEGTTPPAAATMPYLFPGTPAPAVAEKKRRKKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209588_1000238

Overview

Ecosystem & Geography

Associated Families

Sequences