Scaffold Ga0209588_1000161

Overview

Basic Information

• Taxon OID: 3300027671
• Scaffold ID: Ga0209588_1000161
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19271
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005976	Metagenome	384	Y
F014247	Metagenome	264	Y
F024764	Metagenome / Metatranscriptome	204	Y
F035699	Metagenome / Metatranscriptome	171	N
F085527	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209588_100016113	F085527	GAGG	MVLIVILMSAIIYVWVVPAFTSQASQDNAGAAYSEKFETVRAQFANNAVSSPEPVAACGSQDGSVGCSPGSYLTCNGSIISPYSGNVVVPVNGVCLITSTVNGNVYVYTGANLTVIGGTINGGLEVDTALVVTLTNAHVSGFTGLYNVQTVNISGSALNTSGSTSVTTDSCCAALYAGGRGYFSMTNTNVTGQVENEVGHNTIVNNNHVSGRLEIESADLGQIINNVVGSLDLDANGTIVIAGNTVTGATGCPANPIAGKSVCYGSNAWCGTGNNQIPSGQTNGNCVGNVEVDVRNTGSIPVKFLQVYMTNIPLAAGLSWQLASGNPTQCGSGQSATCTLLPIIIPVGDMAEITMGWTAPSGSFPLPWNYIYFIFVSSHQNYVDGYLYFQQGLGMPLQSRLEQRTCPPCY
Ga0209588_100016114	F014247	N/A	LFWSGLWIYTVATGLASMIFMAWAFYVETTGRGALFIEPNRVLAAGELATVATGMIALLVLFFRGLSQREQALTESLQE
Ga0209588_100016115	F005976	GAG	LMAGGLILAVSVLLVNSEIAASIFGFALGSLNVLIGVLTARAVGIAIPADQAGRVNLSIDKGVIRTNIYAIGFSEKKMVLRRLSSAKLTVVAALILAVLGAVVAGYFGIIVGGITAFSLQEFVTQRRRDEVRRENILDSSADSDLEFSYDEIEHLQLLGNRIRIYLKDRVVRIAISRRSARILGPMLEKIIPAKILSGPVPSGKDP
Ga0209588_10001617	F035699	GGAGG	MLFFSPQTPLGMPKKNGIPKSLLADIKSVKTRLSGLERPKAILSDIGSLKTRLGSLEKAHTSINKELKSISDALKRQESTIAQLGKKPAKKEKRKPSEYNLFLKDKMSAGMSMIDAVKAWKEKEGGASSSSVKQPGQDWQSPSQQY
Ga0209588_10001618	F024764	GAG	MTRENIARFGTKAVRYIIVLVVLIVIAGSATYAVMSDTSIHGLTVRFYNNVSRYCTNSTLTFNFNQVVVYSKTSLETSLSHVHFTMSADGVLVGTVSAQDSKFGPGQSVSYYSLTFTNATLDPHSQPLKSQIALGITALVSAGLYSSTTTASDSELVTFSGPPC