NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209423_10473207

Scaffold Ga0209423_10473207


Overview

Basic Information
Taxon OID3300027670 Open in IMG/M
Scaffold IDGa0209423_10473207 Open in IMG/M
Source Dataset NameNasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)616
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083360Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209423_104732071F083360GAGMAQKDDIQTPQRFTIEEEQTRLYRRFNAQGTQLTVRLLPPPEGEEDPKPMSHFLDSVTELFEYALRDLEDSDMIGNTISNEVNVKDRAIGISFRRKDQITGDVIWSVFEKVAQSNARFNALDTLLMTVHSAKMLIGHGRGIASKARPLDIMVHLKRSIVQVKAKNNCLAHALVIEKA

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