Scaffold Ga0209423_10146892

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209423_10146892

Scaffold Ga0209423_10146892

Overview

Basic Information
Taxon OID	3300027670 Open in IMG/M
Scaffold ID	Ga0209423_10146892 Open in IMG/M
Source Dataset Name	Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1094
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	laboratory colony in Florida, USA
Coordinates	Lat. (^o)	26.0625	Long. (^o)	-80.2332	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004257	Metagenome	446	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209423_101468921	F004257	N/A	VYKWKPMLTRPLGRPKNRWEDDIINDMKKLKIENWTSCIQDRNKWKLYVEKAKTFKE

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