Scaffold Ga0209423_10010179

Overview

Basic Information

• Taxon OID: 3300027670
• Scaffold ID: Ga0209423_10010179
• Source Dataset Name: Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2441
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000064	Metagenome	2797	Y
F024917	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209423_100101793	F024917	AGG	MKVTKKMLLYRLIYYFQSALHVSGDIFAHHQEHLTVFTVSASIHPVHLGEYYQIL
Ga0209423_100101794	F000064	GAG	MSFNLDLNPLNPELNPICYLLALLGAHHFLHVSRIRV