Scaffold Ga0209482_1114652

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1114652
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 842
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005454	Metagenome / Metatranscriptome	400	Y
F022015	Metagenome / Metatranscriptome	216	Y
F038301	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_11146521	F022015	N/A	MYYQSKSNMTWKQAFAEVAASHLKHEIICAIASEVVGKPVENLIGFTDEQRNLVDNDYYNTTELCE
Ga0209482_11146522	F005454	N/A	MRIIKHYNSHFPEREAYKCTIRYTTKFGSLDEVTKWRDNQLKNEDYYKSLEESNTKAAGEFYKTLTYKGD
Ga0209482_11146523	F038301	AGG	MIKHTIMIVAMFASSNPETRLCNLQCTNHDKNVIRVSSPDIMEDPKYNDGLESGYILLCNGEAEGFTNHNTGDIVCDGTNHECSVGNTCKDGEGECYVCY