Scaffold Ga0209482_1007280

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1007280
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5691
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006200	Metagenome / Metatranscriptome	379	Y
F013232	Metagenome / Metatranscriptome	273	Y
F057685	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100728011	F006200	GAG	MSDWMERLVKKYSVPVNTETDRRGILNESQVKNLKDGKS
Ga0209482_100728012	F057685	N/A	MKIGNVDSVWTCGCGSMNAGYRKTCGGCEEREIKENLTPKKDLLKILQMLKEDFEMLQDGSWDMNYSDGSEVEASLDNVNKAIEILNTQIQTK
Ga0209482_100728013	F013232	N/A	MSDREIMNAKSGIPMWWKPGISFLKQDWINHPHLKHFRNKKSTDSNCDCSSPKLVELWEHDSCVRGRIDTTVCVKCNEVESLSIIR