Scaffold Ga0209482_1004722

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1004722
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7496
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F013234	Metagenome	273	N
F066150	Metagenome	127	Y
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100472211	F066150	N/A	MGLKYSNNQVAICGGQMKIIHNYELKEMGEPIKETDCWLFFEKGKVAKHTIENFYFENFRKLLAFKKYQPINNTIN
Ga0209482_100472215	F013234	N/A	MSNIKYSKAMETIILNRLMEGESIRSITKDPKMVSWATFSQKLKDNEKLQDQYYNCKKIGIEMVIAQAQDKLTESIATLENGGKMDNSLPFAHLIKEMQSNAKWLSSVLSPIRYGKDTKLTLNGGDKPISIKWEQ
Ga0209482_10047222	F004990	GGA	MYGDPKKPCCICKKGADLNEKGKRYCADHYALHILGKSMSQIEKELKIII
Ga0209482_10047225	F004629	AGGA	MIPTRITVDELDNMFQIATYVEKYMPSPLNMKNKRTEMFSLIDRLYGISADKDTYKGEEKPKMKIRLNGGQIQTYEFCVLLMVKGSPANRDIIGLRNFPYRRSFRELRKFFMPLSHEKVRADYYKALSDLLRVYNTKGLKFIYK
Ga0209482_10047229	F089429	GAGG	MKAKNLDIYSIFSRTYKGKKMFPFMDFLEIGRLKKGKTIKQVSNVYQFPIKNYYNQKRRV