NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1001191

Scaffold Ga0209482_1001191


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1001191 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18695
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037425Metagenome / Metatranscriptome168Y
F039346Metagenome / Metatranscriptome164Y
F044731Metagenome / Metatranscriptome154Y
F044732Metagenome / Metatranscriptome154Y
F084732Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209482_10011911F044732AGGAMTSHYFVEVISDNGAINRWEALTKEQADFIYNEQVVINGAKNTTTGKTAGINSNPAHRW
Ga0209482_100119124F037425GGAMEKKWDGFRQQYQGIIKNLLNNVDICNRRYVEEGEGGYLVQRDVYIKEIEELKTFIKEKELKLEYYREEDN
Ga0209482_100119125F044731GGGGGMTFEEVYKKYEHLTVEIVSDLDNPLECAGAMMGQAMKLYKLTLSPEDFEALMQIISQASGLDATGFDDESSSGTLH
Ga0209482_100119127F039346GGAGMVTSFIVTLIECLEIAFITLLLVQTNTSKRDSEKHLRQHLQVLPQVQIFMFGILGLIAGFLSAYFLHDILENYEWLMYAILSSLFFYLFVKNKEIVAHIKSHADDISNSSSSVLFLAAFFIYGRESFEIFSNLFLNSNSSWFAAGIAAIVAIIIYFFARDGKVKVYIFKFGYWAYLLFGIWFGYEALEHLHIL
Ga0209482_10011918F084732GAGMSKNVIKFPNSKRKLTNEEEKIIRQSANLIHNTYSNNNPFIKPKEMTEETLKELIQDIFELNED
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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