Scaffold Ga0209482_1000873

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1000873
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23614
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (59.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031665	Metagenome / Metatranscriptome	182	Y
F042029	Metagenome / Metatranscriptome	159	Y
F068146	Metagenome / Metatranscriptome	125	N
F070574	Metagenome / Metatranscriptome	123	N
F096078	Metagenome / Metatranscriptome	105	Y
F103920	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100087310	F070574	AGGA	MKKTIITAALVVAMASTVQAGNYDNTGVSVAAESATMGFKLSTDDTSRSVGVYTLGRSLDLGAVMADNGTNRDFSLSVGKTLNMPIGPVAGYVAGEVEYNWGDTYTKSEMHFTPTVGANVAMGSITPFAELGYLLKSSEGDFTDINKVNPTVTIGTSLDLSLSTTLTAKLTNSLNTDWNSTDKEIGLGLTVKF
Ga0209482_100087313	F031665	N/A	MLENEAMKISEFIQPLLGLGITAIFAFWLKEAVSDFVASVRWKMKPGFEPGDVVFLDGEKATIISIGLSETVFEIDNGRGKVWRYIYNKRIPTHRLEKVIVNKS
Ga0209482_100087315	F096078	N/A	MSKKHLLSQLMTRLETTTSQEDKFEILYTYRKEPIFKRIITIAYNPWINFGMQEFTPRRMGKQFGMGIQKFLHILTDIIDEKYSEQEKEFSCQMAMQHIDADEAELMVKILHQQLDLGLDTDTINRVWPGLIMVYPLSTPSTTDYKTFNTYPAAVQPISRGLRVNVIIHKDKVLYKNKLGEDILGWEMYDEQFMNLAQGQSTVFDGHVVVVDGTTIVETDNKKVQHADAENIRFVFWDVIRYDGFINGEDTRIGYNWRYNGIEHMVLLAMDKNKTPCYDAVKADLVGSAEQLELTVKKFNSKCIIKSLDGTWTRGVDPTQIICDL
Ga0209482_100087326	F068146	N/A	MNQDNSSYTVTAPDLYMTEHGISIFISSTSDELVDSIKSTFETVVATSIVFLVQNKKTNAGTLPWMWNNSKTCDFMIIDVDTCAWEDIMAGLLKSKEEESTVLFYSDKYKRRETVKLINATGTNLVVRSISEINNYIKLQMSPEYINEI
Ga0209482_100087340	F103920	GAGG	MPTILDENKVVLFNDPIKMYLFKETNEVKIAFKISDYAVINRQMSQEHFEYILENWNIADGVQGLEYGEGKIWWFHSKFGPRPECVPANFVNINFNRFTFRISVAEMERVVENYYHQKNNRMHWDES
Ga0209482_100087341	F042029	N/A	MSQMEIPYLLNNSPMLHGDSQAGEHWATYELNGEKIDHEPGPLGKIRVHDDYWNISNEDREWYNYDVRNTIDIKTEQLDGLLHLIENKSIAVLLHAKNYHDIWKWSRGLPVLMIRTSIDEWDGNIVSWAAREYNYLMEDDTNNNHSDDNHAWPGVDSIVDAYIAKQQFNNDISDIEGDVILAQSQWSTQQGLDTLWDTTGIETPDQNWIHQYLEDYTNHQNINKELAEELTNAYNLRRK