Scaffold Ga0209482_1000863

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1000863
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23930
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100086313	F008105	N/A	MNFFQLQNKLFYSKKDKAEDLDTEGEQAFVPFLFNRWLSFYNNDMSVFTNETFNKFSTIFDDKQQAYRLYYYLIPRLKWKKITYIKKKKKEAEEEENLQLIANNKNISKRELLQYVELAKTFAK
Ga0209482_100086314	F014794	N/A	MAMASIDNLAPTKSMIDLSNPDKGHFGLEDYELSFIFDDILLIEYVDETEEGEVLRNGIVVPTNAINKAWRRGKVILAGPDAKYAKEEDIVVFPNNMGVTITGVHVTGKGKVRKGIFLNEERMFGICKKRNDSTESNT
Ga0209482_100086315	F018622	N/A	MIVQRATLDSILLDNVCDVRFARKIVKPGQAPTRRMLCTKSLSLLNSTNGRISLNYFPPKNPPHSYLAPDNLAVAWDILIQDYRNISMNQCNLISQIPANEDFWTYFNESIYPMSSQQKFNFMNS
Ga0209482_100086316	F018815	N/A	MNINLERVTDFLKPFLLRDIIIKTDKKILKKGKLKIFQIKQYYINLTLEYNDTLKSYDIPYPFKVEDIENCTILNYHLSCFIPKKQVNTIKFLDSSSKSKLYNNLVYILPSEET