Scaffold Ga0209482_1000657

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1000657
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28534
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002965	Metagenome / Metatranscriptome	517	Y
F014789	Metagenome / Metatranscriptome	260	Y
F022081	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100065714	F014789	GAG	MNEVSMLETLKKEFLGMSYEVEYEKYGLSGIIEGLTLTEKMHFVSWEDACDWAGKVTMSTKVPYVILEMRGQNGEVANF
Ga0209482_100065729	F022081	N/A	MNWSTDMPALIPVDRFDIEQEIMQIGHFTTILKNYADMMYDGEITSPDADSIHTALHGFANLLDAHSDKMYESHKKHYNLDEYS
Ga0209482_100065746	F002965	AGG	VRKGYIMNKKLSEACGWIGMILIHGATAPTSISVLMGWSTELPPLNFILLVWMGLALFLVRAIGAKDTLYIVSNAIGFALNSLLLSLIAFS