Scaffold Ga0209482_1000541

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1000541
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31936
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (79.66%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004630	Metagenome / Metatranscriptome	430	Y
F011529	Metagenome / Metatranscriptome	290	Y
F040871	Metagenome / Metatranscriptome	161	Y
F045369	Metagenome / Metatranscriptome	153	N
F076496	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100054146	F076496	GGAGG	MAGHKYSKEIQDFLDAGGVIKVIPPEDTAKTLEKQSNGYFKGRPVMGPTKKKEES
Ga0209482_100054147	F011529	N/A	MEWYTTMNWIKKSKRKTTDNLEGIRLRSCQLWLDATGFHPFLDPDTMKLPDLEKGFGCTYAELPKEAWDTMDRYDEVVARRSVYAT
Ga0209482_100054151	F040871	AGGA	MSTTERLELLEAKLQQIGMMGQWYQRYDISTGAQECKAIVKELKEVLDPPCGMSRK
Ga0209482_100054154	F004630	GGAG	MNNTKLMSEYYKDDGSVAKVYQIVTGMDGERSFFSITYKDPNGVRLMQEDFPYKALGYVEDAAENWALGIKLLTEG
Ga0209482_10005418	F045369	GAGG	VPLNSYTETFNQTDIDPKRLYERAKPESEKITWNPNMRSKEKILEDCLMGQCAELYLIDKCGYTDNPNGFMDVFDLEGREIEVKTTRNPYNVKYMLGDLLVRKVEFGHDVADTVLAYHYQEKTGDYIFLNEYNFNGTEYVQTQ