Scaffold Ga0209482_1000051

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1000051
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96651
• Total Scaffold Genes: 148
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 109 (73.65%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010695	Metagenome / Metatranscriptome	300	Y
F022909	Metagenome / Metatranscriptome	212	Y
F023957	Metagenome / Metatranscriptome	208	Y
F033111	Metagenome / Metatranscriptome	178	N
F034245	Metagenome / Metatranscriptome	175	N
F040179	Metagenome / Metatranscriptome	162	Y
F048576	Metagenome / Metatranscriptome	148	N
F089156	Metagenome	109	Y
F089420	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100005112	F089156	N/A	MLLIQFNTSIDISIFPVEIIQTFKHDTYLIDLNLTDYSTINYITSNYDILSMQSNADMPYIDVYEAHTTSYTNVTTEDTLAPLIEKLDLLSMAEPHIVCFSWTTDRNYILDYRVKKLLEAGFLVVCGGGNADLPITDVSPVAVDGVIRVGGNKYNGQYQNWIDIYDVTVPDVPNTHEAAHIVCELMINKNLELDYSLGFYSESTIRSAPWPLRLAQTPSTAIKYYEFMPVSNLRYFSGEHLLPVREGDTVSVLYGGVPLEDFTSPRNIQLDTTVPRGCTFNTQSGWLYGTFKFKVPMFHRFLADINGQLFEYHIISADADTKPDFAECKQKYLNQPYDAPPFTMREYWVPMARPIKLLEPGDPFIRTFNLNDLHLYRSYE
Ga0209482_1000051129	F040179	GAGG	MASFAQEKEMKAHLLLIAEAGTYAGYFSQGTNADGDVSTFYLTTDSDKAAADTLLDAKVAELTANDIGGETAGGEGPSEFDGFTPIHYDDDVAGSDYRTWFVKDADGEYYKTDNGNSDNLAQISDADEITTLITDSGYIA
Ga0209482_100005113	F034245	AGGAG	MRGVTFSEFGGGQNVEMFLHAPTQLPGTPMQEAVKTAITIREKYTKDLYVWCDYSVQHIYSQIAMQAFTMADIPFVAAIPVLSNNLSKRENDCTIAYCEQRNIPYKLFHIDVPAFFDSEEFELHGETFPTTQPQMTIVGKFFSMLPDCCVVYPGFMMHISNSDWTRTKNNGFMPFVPHVTQEHAAEHHGLEYTNFQEHYVDMYTSWMFTQSYGEVLKSATQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTNKLIGIEKLKSHFGHDKYDKELRQRLVPFSPLTLKYASLQYTVKVDTKLKEMLQTYHETNFEFFNKLF
Ga0209482_100005116	F022909	GGA	MDDKPNKEILRTFFDGKIGCIEYSEKWRPQLEEFCRVAKDLGYVNNESPEAMKVDEIQYHCMIHIPTNRIYAVAGVQYMPEYREGYYRIWTRLSRIPMEDIPMTRMTRYGRGEMPEFDGLLYFNCDWAWKQSNCKATFGTTLANKAYADNYVRSANTITDYVAKNWWRRKGIATPEGMTEFYGVPQVVWNMHFDKFKELS
Ga0209482_100005124	F033111	AGGA	MRNELPYYFEVPEMPKIPFDVSQYYIPDEDRLVAQEDKKNLDDIQGVKSRSQSANWYQSYMNVEENSRGQNKRDFKEVNLYEEVDFELTKLMKEFLGDTLHLRFNSILMLRTPANCNSRWHCEGPVFHTRQCALNFPVFGNADVMEGQWATFPRFKDIPARENEKMGFVTKTDMENTEILCKWDKPTMPAFYNTMIFHRGMNEHSNIDRVVLSCAVEDFSDINVVHRKYSTGKLFK
Ga0209482_100005125	F023957	AGGAG	MSNKTPYEIRLELIQEARLILQAKAGKAENMPSTEEVITEAEKLNSFISKKPQ
Ga0209482_100005147	F048576	AGGA	MTIEAYVPKHSFVSTALASANITIDLSTAKVLELYGNAGTLLNDPENLVEEENYTVFEYDQEALDLGIEDFPDADFRAWNIHNQMNNPGGDIDAPLPWSGDEKFDLIFTYMKTANEDPEILFRQLDECYEHLNPGGTVIFSVFLREVALNYFIVRRTHEYGMLDNEIVEKTENSNVFCLINNDDSRINIDRVPTTGDDAVLEAQHYTWFWNNDYLTQRAQTAFPDATVTTRRLPPMWSIQNPFVIQKNS
Ga0209482_100005155	F089420	GAG	MDLNGIVLPKGFELPECHHSIEKWCSNCDRDYVTYAKIPHFRKYKELHMWTNEEFNKQYPNGID
Ga0209482_100005182	F010695	AGGAG	MYTKNQNTTNQSKDKIVSIDGYSIGSFTCYNADNDDSAIIQLTALEEMWYGHEENIDHPEGSEYPVSINVPHMKVMRDRVADSVLNRTGINIKDFDSIIHATTHPGRDKQGNIINNDFGNANVVRNV