Scaffold Ga0209482_1000044

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1000044
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100504
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (38.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017670	Metagenome / Metatranscriptome	239	Y
F020440	Metagenome / Metatranscriptome	224	Y
F077491	Metagenome / Metatranscriptome	117	N
F099892	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100004433	F077491	N/A	MKKPLNTKYGIQITKPWSNEMYDHNDKVADLMKIEILIQLKNAKHTDDEELLRKVSSIVCPTGYGTGFDFEDIYNETLRELENVQNFWLNEEYPYAVSKGIIPEVKLEFIGY
Ga0209482_100004478	F099892	N/A	MSRKTFRFDDICSNADMKLHIDIAEHIKKEIPSADVIFCVSPLVHDMSSEIGKTKQRIFPQILNAHSDYRKFYQVDNCGIPTFPEWISRAGHGLIHVDHRLLTKETQELSILTSCSLSKSTTFVPPFNKWNAHTDAICNEHGIKLVKFEDGWLCCEYNEYNPKNNLWYIHAREFTLESFKNWLG
Ga0209482_100004492	F017670	N/A	MMYYILLPDDAEDGVQYSTNVLGESSFKNFWADQGFEILVRLIEMYPDTLDTVKIKDDQSKEYSIEDFLNITSKLNLIRN
Ga0209482_100004499	F020440	N/A	MNRLREYSWKDWINVPKNKELYNSNMNEGLRQFQLEKNRRDKLTQVAVFNQKGFQ