Scaffold Ga0209009_1003123

Overview

Basic Information

• Taxon OID: 3300027667
• Scaffold ID: Ga0209009_1003123
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4112
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029541	Metagenome / Metatranscriptome	188	Y
F044089	Metagenome / Metatranscriptome	155	Y
F068086	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209009_10031231	F044089	N/A	MNYIKQLQADKAEALDAARSIETAINHLISYLSCPKFHVDTRVQVGDVLRDLLPIRNDVTHMALTLSDGGTNDKNN
Ga0209009_10031233	F068086	N/A	MNSSTSYRTWIGFNDNSDGGITVYSVGCYLSQGLQVDVFAFEHDAYLYLVDQAEGLTDEQRIELGQLAELPDREAFWMLFNESVSPLTSYRIESHTLQLQPNLFKA
Ga0209009_10031237	F029541	GGA	MIEIAISCDMSQTFRQRMNSEPKQKRERFQQLTQNPKVKTGNVFAADLRKSKIHPTVKKLTVWRKLNRLSQRKAVAVLAQYYFHATFASLRSWEEGRRSPNSHTAAILEKFLLDHPTVERPKKW