Scaffold Ga0209009_1000032

Overview

Basic Information

• Taxon OID: 3300027667
• Scaffold ID: Ga0209009_1000032
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62169
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (44.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007987	Metagenome / Metatranscriptome	341	Y
F023404	Metagenome	210	N
F047601	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209009_10000323	F047601	GGAG	MRRSERGKKPQHTLFMNEAQLKKLVNEAVILHRDIAAHSERLKALKADLIREARRHKEDFMITDGGGSRWTACGTDGCIARVNFPAPALLSHIDTEDETFDKIIAIAGESLDELFDSRHYLKPIADFRDEVAAALPRRTAAQLIELCQVECSPRVSFETAETKTKER
Ga0209009_10000324	F007987	AGG	MKANSAKQLNRVETDSFSSTTVAALLFLAAKFPYRQFNSAELCIVSGIGRTAMSQIKNSADTPFSLGKCTLQRLDAWLAKRPGFKQQ
Ga0209009_10000325	F023404	GGAGG	MARGIRKSITIPGLLTPIVKRRCAEFGQTIFTPYAVELVCYDLRSDANHTITLEIARDTQAAQDAVDRELVAHYRPGQPRKGLLVQLVERVGHLQSVAARNRHDLIFAPLSAVAERVTFPIDIWRLADPRWQKLGYASLSAYITALIRYDLLVGGPHASNTADCRSKLQRKLTRKTLADRRKGRRRKILLDHLIEEREGRPVPQEELERVKAKISQALRRISVS