Scaffold Ga0209282_1145369

Overview

Basic Information

• Taxon OID: 3300027666
• Scaffold ID: Ga0209282_1145369
• Source Dataset Name: Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1153
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001430	Metagenome	696	Y
F038571	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209282_11453691	F038571	N/A	MLKIKILPITFKIVSDECAENKVLPITFEIVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209282_11453692	F001430	N/A	MLKIKILPITFEIVTDECVKNKVLLITFEIVTDECVENKNLADYF
Ga0209282_11453693	F001430	N/A	MLKIKILSITFEIVTDEYAEKKILPITFKLVTDKYAENKNLADYF
Ga0209282_11453694	F001430	N/A	MLKIKILPTTFEIVTNECAENKVLLISFEIVTDEYVENKNVVDYF
Ga0209282_11453695	F038571	N/A	VLKIKILSITFEIVTDECAEIKVLPITFEIVTDECAENKVLPITFEIVTDKYAENKNLADYF