Scaffold Ga0208990_1057495

Overview

Basic Information

• Taxon OID: 3300027663
• Scaffold ID: Ga0208990_1057495
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1150
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002295	Metagenome / Metatranscriptome	574	Y
F062921	Metagenome / Metatranscriptome	130	Y
F105693	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208990_10574951	F062921	AGGAG	MKKSYLVVGPLLGAMLSAVALSTPNVTGKWSGTLQMDGENDAKPAYSILNQDGNKLSGSVGPNESEQDSFEGGKVDGDKLTFDVPQGPNAEGSIHIEMQVKGDQMTGRATWSGPPPHSGSGKISLKRVVEK
Ga0208990_10574952	F002295	GGAG	MTSAVRASCGLYKMLLFTYPSDFRLRFESEMITTFSDLIYGEWKHNGLPGVARVWRSAVGEVFSVAVPLRLRSPIVIATSLSLLLSIALFMAVFHAMTHVCDGK
Ga0208990_10574953	F105693	N/A	HENRRRYYKLTRTGKAILGADLSRMESVVHLARDKKLVPKTSE