Scaffold Ga0208990_1000654

Overview

Basic Information

• Taxon OID: 3300027663
• Scaffold ID: Ga0208990_1000654
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9066
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029078	Metagenome / Metatranscriptome	189	Y
F049545	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208990_10006542	F049545	N/A	MKSAWLPKLEQFLKSSGLIRLHPESVEPTARVAVEAMAGLPHYDEIWAGDLHTTLQIVAIASGERVPGVEFARRAQLLRERAVSMSARVRGEVQALQLALYERPVSPEERDFVVEKARFTPRWPLAIGRVATWVVALAEPALYAGPFRGWPDELSADQIRALLG
Ga0208990_10006547	F029078	N/A	MDWLALKVASWLIHALVVMVSVAAVSPRNPKNTLPRALLVTFLVAVVVTPFAWFWFLIIPGVIALVAWFLVYAIAYDIGFGQAFAAGLVQVALGTLVDYLLRPYMHLWVGPAPG