Scaffold Ga0208990_1000557

Overview

Basic Information

• Taxon OID: 3300027663
• Scaffold ID: Ga0208990_1000557
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9623
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021735	Metagenome	217	Y
F046554	Metagenome	151	Y
F046970	Metagenome / Metatranscriptome	150	Y
F062651	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208990_100055712	F046554	GAGG	MVPLNVAATWTRMLSVTAGACAAAGAPGPGTCVRGRPALEWIGGPWLGLIDFDGLRRAEREVLEPWLFAHAEPLLLVRHLLLAKPLGEDIFIDLTPQAIEAMPQGWRDAARPILILAPAGRGRPERRREYLDALSRLRIPLVSQGSELWAVREFDVDFLVAVAQLSEPLERDRFRDSIEPAQTRLFDQQLAVAEAAVLDDLVGGRDEETALALDLDALSSLHPGAHPLALYSAVERAHNR
Ga0208990_10005574	F021735	N/A	VSAEEMLALLRDRRRSAPGERSTPSVSLPLRIHPARASALGWLPEPFALTLLVANGIFRQEDGALLAGQFGPVVAICAEYERPLTSLGPPALATYSLARARLQGMPTLRLAGGGWFRAPLRLETTHRAARAASHRDEAVARAARFLEELKAVWQRRLGAVLEIAWPVYAPEHPGPLLDAVAGTALPELQLP
Ga0208990_10005575	F062651	AGGAGG	MQKNILILSLAALLACAHEEVAQTPTERDWEKGLDAARGPQIAPVGPIDTDQGAYTYIRRREQEHDLGSRMTAAGLDEIIAASSQVLASAMALPLFRAGVYLGQPRLIERGCTSARRVTHSALRASGNVDAVLQGCGALNAAKQGPSDSCGDGRQKLRDAYALLAADKGADAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRPVAHNP
Ga0208990_10005577	F046970	GGAG	MNRTLLLIALAAAVPAGAADEFKPIKASESVTYPLPPIPLPAAPPVDGKWAETEDSPALRVSRAWVKLGQAAGVERSEATRRLYQAWKNEVAKDGTHGRIAQAAHAKFLAAYKKDLDQARSIYEGVLRDVDSLDADNPEGGTQGGEGSSGLAREAEEQIRSADRDERLTNSACYLSPDTCQQGDPADKALQDEISALVKGTLEAGGPDGGLSVYSLRRKAGLLALRARVMAAVTQRAAARLATEVATQQDGQGSPRSLPSPVAPVVSVARRGSPPAADPYR