NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209459_10203734

Scaffold Ga0209459_10203734


Overview

Basic Information
Taxon OID3300027661 Open in IMG/M
Scaffold IDGa0209459_10203734 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1a BELIZE.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1009
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086578Metagenome110Y
F088274Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209459_102037341F088274N/ALEISGSHSNIISDSYVFHYGNELVSRTGNKEIHHFVTTNYDQKYPFAAYTLAAIGD
Ga0209459_102037342F086578GGAVQALQALRYSRGAYADGKICMKFRIAAAWEGGKVYGFLLGFHTVNFVLSSQTAAKMKYKFCVKIWFRNSKGLLRN

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