NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209736_1012547

Scaffold Ga0209736_1012547


Overview

Basic Information
Taxon OID3300027660 Open in IMG/M
Scaffold IDGa0209736_1012547 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2695
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000739Metagenome / Metatranscriptome913Y
F018044Metagenome / Metatranscriptome237Y
F018046Metagenome / Metatranscriptome237N
F086235Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209736_10125472F086235GAGGMNSKLRFASGVSVLFTTLAFGHIMIKDTQDMMSHHDESQLFIIAHTIIAIVLGVLSLTGGFVLLTNRRRPA
Ga0209736_10125473F018044GGTGGMEVEGGRNIPALGPYPARGEYEHCFTLEGPRGQFVQLTPTVAEHIARAIEWSRHHPRSAGKRALHDREQRQERSYDAYAYNILDDAVPAFHRQPFVTVT
Ga0209736_10125475F000739GGAGMMTRVEVWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQTGIGATFRIVTAAALINAVSGVAAYLQKSPLPSGD
Ga0209736_10125476F018046GGAGMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKTQRALGN

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