Scaffold Ga0209736_1001367

Overview

Basic Information

• Taxon OID: 3300027660
• Scaffold ID: Ga0209736_1001367
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8030
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209736_10013673	F025325	AGGAGG	MHSDGPKRLKKTWEELTAAASMETDPEKLGTILEEILAALEERQRTLSLPPNAFGGNRQL
Ga0209736_10013674	F005268	GAGG	VSRSDEETEEQQVWRALSEAGLVEIRLEEFAERIKDVKRIVTVRLRELLDFNTGIKERESAAYSLGTLKGLELKVLANAPKPPDPSEM
Ga0209736_10013677	F014888	AGGAG	MNKLLEVLLTVVALAGLYSAIQMNTSPPGNSAVRAEQAVVIADGSDPMPLCRTKACRPTQ