Scaffold Ga0209736_1000701

Overview

Basic Information

• Taxon OID: 3300027660
• Scaffold ID: Ga0209736_1000701
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10808
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010343	Metagenome / Metatranscriptome	305	Y
F026083	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209736_100070112	F010343	GGAG	MRRKLVWIERQNFQGYGCSECAWVFNPSGAPTGKSLDEMKQKYEERRDKDFAAHVCTEHPRPKNTKD
Ga0209736_10007017	F026083	AGGGGG	VAVIKFKYAVPLGQTMAFESVYHRNLQLDLSEKQEVWNIPGAFFAWMFVDGEIAGESYGIPLASSNEFIEELPGISETEKEKAVCCFSNTILPAFQRKGYGSILKAHWLGLAAAKGFEVVYGHARPGGSQALNAKFGAVFLESLPDWFGSGEDYRRYRLILNATA