Scaffold Ga0208975_1108443

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1108443
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 801
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F056318	Metagenome	137	Y
F097311	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_11084431	F034068	AGGAG	MQIKTIKREKDIDYDRLYQAYEGLIDWIGKNEVDGQETLGLLVKAAIALAVTNNLPKKEILEVVSVTYEMERSMRPTSNEVH
Ga0208975_11084432	F056318	GGAG	MFKHITPHPWHSSNVTVWGYQDQWGYPRVADCKSLSTPMATQRANARLIAIAPQMYEIIQKMQSEDAKELVRYMEKETDHADQDN
Ga0208975_11084433	F097311	N/A	KERIVYLTSALKNLTLSADRYIDDGSWIEHLSLDVEFAKGVLKATKYSKEERGIRDAVGRSIKGEKNEPHTMAKT