Scaffold Ga0208975_1019160

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1019160
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2262
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080895	Metagenome	114	N
F096874	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10191601	F080895	GGAG	MTLHSTEYDDDQHPPRRTPEWYACGSCGDDIHHERYALGYRLCMHCGNQAAISARQSWCVVQPYGKGPYMLVTEAS
Ga0208975_10191605	F096874	AGGAG	MSRPIKYRNADDLLNNCTIKHGCFIWPDADMNAPLISPVSPLAKMLGTNSVARMLFIMCRHIPAGTRLVKRCDTKFCVNPFHHTEPNGVMRQRMTMRDNGRDPFALLPSQLSTEHLRFSFPEGVTLGSLKPCDPEVVSALLDSASIAGFDGKGIPKSMTKTYDVPTATPDKPVLVIRKREEAKPAVKPDEKEESIDDFFDMLERGFAARKNPTKGGMSA