Scaffold Ga0208975

Basic Information
Taxon OID	3300027659 Open in IMG/M
Scaffold ID	Ga0208975_1014112 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027659 Open in IMG/M

Scaffold ID

Ga0208975_1014112 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2698
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2698

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F023103	Metagenome	211	N
F035667	Metagenome	171	N
F044972	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10141122	F023103	AGAAG	MAKFKFENVKFEQIMKDYATIREVTIPDAVMLNARLLCVELGRRTQPFGNDDTSGKTRVKNDIGKIIKPPVQLLAMANKVENKKIGQRLKTLIMNQRYDVVETIFRNLGFLNKWTGLEFLDSKSGIKTHHQDARVKPTGRTKTKGSKLFISSGSELNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPSWVKKATRSGSGSVQDLTSNIKSPKVILTNNVPWVSQILPASEQLNALSVVSTKMRNQMNRILKKRQKTLTET
Ga0208975_10141123	F035667	GAG	MEELPFAAGLQLLHADDYANGRHSAWANNNARVDIDALATIEDTLAKYGKIQVRECEI
Ga0208975_10141124	F009267	N/A	MKKNKDNELQKDDEILRIQAMEDGPKKINGRTMRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGAVNDRDTFINAVDSWIEKNMKHHHETTGMSEAMGAAFDLYNSASPASEAGEGSGSPN
Ga0208975_10141125	F011222	N/A	MPLAPRLKGAAFLYMDCNKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEAKEPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISEHASDKTKQEMTRFLK
Ga0208975_10141126	F044972	N/A	LQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKSATISLDGVINGGVAYELANVLTLANDTTSYGVSGGAVIVDSVSEKTGAGTFKTITVSATQYPEIV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208975_1014112

Overview

Ecosystem & Geography

Associated Families

Sequences