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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027659 Open in IMG/M |
| Scaffold ID | Ga0208975_1013881 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2724 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019635 | Metagenome / Metatranscriptome | 228 | Y |
| F022865 | Metagenome / Metatranscriptome | 212 | Y |
| F031455 | Metagenome / Metatranscriptome | 182 | Y |
| F081253 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208975_10138812 | F031455 | GAGG | VRLHPTIEQHRLHKLAVGSSVLLKIPREQYTPLRRVIAFYNECTDDGTALRTKIGPDGITVSRREIVRIADSPDWKVGKSNPFVCTDRLSLEHAVARANEAAKQLGRGYRFRVIVEGGKTHVLKTLCRCRRVIHREEQYLRIVGMIRKMGVDCVGRVDNVELKDVRRVQRNFKHSLRFRAKQIADNTFQIRRTR |
| Ga0208975_10138813 | F081253 | AGG | MSLIQTPEELADAIRNDPQRVAECLHRINRFGGQAVSCSVLQHSLAVYDSVLSHRPAVRLWALLHDCHEIITGDVVRPYAVTALTHQQAAIDQELRDILGLTLSADDVIAVTRADVWRGGCEFQEVSAGRPVYQHLTPTIDWVEGVRALLSEVTR |
| Ga0208975_10138815 | F019635 | GGCGG | MATIRIYIDGDTEQPTPTPTPEPATDLQAEIDRINRTLCDTVRRIAKIESDVRGLRMRLIENDTEGQVP |
| Ga0208975_10138816 | F022865 | AGGA | MKKAKQTVTEKKPMGRPRKHSTNAVTCVVKLPPEVVRWIDQRYTTRQEGLAAIVANAAGV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |