Scaffold Ga0208975_1010299

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1010299
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3228
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter → Prosthecobacter debontii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011473	Metagenome	290	Y
F051685	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10102993	F051685	N/A	MSTPNWLRFRASERAHVVTGMSGPMHLTPCGYAAHGATGVPDKRAKKCRTCSRAVRPVPQEWRKAGHFPE
Ga0208975_10102996	F011473	N/A	MNWKKYITDPLTNRPRRGAISRIAALLGTHYGNVRRMFDGVWTPTEQEAESLRAIVESRTNLAPKKRSDAGKKRGEYRKRAAVKSGAVPPQLKGLRSAKKTARK