 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027659 Open in IMG/M |
| Scaffold ID | Ga0208975_1007244 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3967 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001272 | Metagenome / Metatranscriptome | 733 | Y |
| F007260 | Metagenome / Metatranscriptome | 354 | N |
| F013879 | Metagenome / Metatranscriptome | 267 | N |
| F017997 | Metagenome / Metatranscriptome | 237 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208975_10072443 | F001272 | N/A | MEITVKLTQEQANGLLQLIDIAVKAGGIQNAKVALPLVDLIFNAAQPKSE |
| Ga0208975_10072446 | F017997 | N/A | VNFIEQIVTALLKWLTGFVQTPPTVEDAKRDPDLKKKLLDRIAESNR |
| Ga0208975_10072448 | F007260 | GGA | VLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSNGDRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK |
| Ga0208975_10072449 | F013879 | N/A | MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALINLANQYGLPQENVAMHKGSSAYAYNAKSGFNPSSHVRMNIGLADNQVGTVEGIYSKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |