Scaffold Ga0208975_1006619

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1006619
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4190
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023041	Metagenome	211	Y
F078246	Metagenome	116	Y
F097207	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10066191	F078246	AGTAGG	MPRPKPPEKLLGRQVRMSDRHWMILQQLGGAEWLRTILDKKAPMPKKYYDNELARISNPADAVFLKQRR
Ga0208975_10066196	F097207	AGGAGG	MPDMQTALSNALKTTINNWEKDDMQTTQTNTKPRGKRFFDVTNNVTRATFDYVKQNPNLTSAEICADMAKLGYKESSVSSLIAQFAVQGLAERDDRGRYITIIDEYRPLKAKKKTLKIVPKPVEVKVTRKYEKKTVTGIGALLREKLENTPMPMPVPSQDALDAAAYAMGGDVPKRFTSLVRTKSPEDVLKDMTVFQARELYDYLKKMFGG
Ga0208975_10066197	F023041	AGGAG	MQKHTPYDTGKVKIGLVYTPPPPESTPESDWIQGVLLGDKQGMTELTLVTIQSIGLIAFIIIGIFLIGGNINA