NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208975_1005633

Scaffold Ga0208975_1005633


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1005633 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4599
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015061Metagenome / Metatranscriptome257Y
F089880Metagenome108N
F094938Metagenome105N
F097609Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10056332F015061N/AMSEKNQQNETSKTILEAFSFIKCDDEKLNERVHAFASLLHTASMMVIKSESRKGEGFECIKYLELAFLYYKESQFRKRFDTEEKEEAPRIIS
Ga0208975_10056335F089880N/AMKKELELFSPTQEGILVSVTTYLRQMAEFVKTEWPGFNITETHIKKAWAKLQKNEYLSDDTPDEMLEMYEKMSADWDMALELEEERINIANQPVEEEPVNESLALIESVKDGLELSSFTKKFDIGVGMTQCVPRGKVEMKDWVAAFAFGLTLESGAQWIVGDSVVALENAGHDDVINQLCANFKKSYSTVSGYARACRAFPAAKRDASLPFTVYREIGNANFGDAKTNAKKQQAMLEVAKVEQLSSAEVRNRVRNEQGKDDKSVLPHRYLVLNVSNYGNSEVKRSVPEKLEAHHFLIDRQDMSWFDAAQGQWVKFSKEQ
Ga0208975_10056336F097609N/AMSNQLEGLEPKDIIKKVTGTIVKLFPEKQHEGNFGPYTIQNGEIEVDGKNYKLAFWKNTQPESAKGRTVTLSSTRGKHGLNGVTFEEENYKNKEGQSVHNEVIKVSASARVEYDGVSDEPVRVSPKTIVTDNPTEALDKIVELHKYVNSLVRHVYKGVEDEETLRAYVSSVFIEANRKGIAFKSERPEPAKVEEPKEVAPADWASAIVPSGTQKGKKLAEIGKPALTKLYEFYLEKGFSTPFAKCVEQAAADLDLDAPVETDDIPY
Ga0208975_10056339F094938N/AMKDKPTPIQEPEVKTECKTEANTTLDFALKREIYLRLISASAADGKFDLGKLPNAKAVVNQGDHLRGVAELLTQCLK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.