Scaffold Ga0208975_1004964

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1004964
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4918
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007579	Metagenome	348	Y
F063688	Metagenome	129	N
F072334	Metagenome	121	N
F082693	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100496411	F007579	AGGTGG	MPTPTKQQIDTQIGNATRELAPGTTWKYNEPGDGYYCLQWLDDPALQPTEAATMLKATELAANPPTVSQ
Ga0208975_10049643	F063688	GGA	MTRYNSNYGSHEQLQDLRKLNMGLHHELDAIKRLLDETTKELHQAQDELTLAIEALVRARDVKP
Ga0208975_10049645	F072334	N/A	MTEKVETPDTQLQKVTLLIAMHDYSPDDLNAGDWLLNVLMACAEQKNTAYYGAKEITKVMQILSVQDCEVVVSNGL
Ga0208975_10049646	F082693	AGG	MAQIDERVTIRLNSQDRAEINYLYRELETQTKQLQARDTFTHSYTPKASFTGLVAEYAFAKWFGYDYVIKPYDPTNDDVLGYQIKATERYDGCLIKQPHNPSGIYILGIVLNDYSEVSFRGWKDSSEIQRACYWRADVPKPGYFVPQAALWPLSDLPETSELQTHRTTGLW