Scaffold Ga0208975_1004106

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1004106
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5497
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100410614	F033350	GGAGG	MSVDVDVPKVKWSMLEWKTIEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASW
Ga0208975_10041068	F005846	N/A	MTSLPLPARPEGSPIPASHQEFSKGVSIEGKLNGWRGLFDQQTEQGYNRKGQFAFNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYADRMKEIEHLEAVTFDVAENKLLRFVSLAHHKLNTIWQEMSFQNTKAGEVVWEGFVMKATDERNYPFITHPNNHSPSWKKQRICS
Ga0208975_10041069	F005702	AGAAG	MLLIIFLVSFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNHPKEQGLVLPTKNWVGRN