Scaffold Ga0208975_1003271

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1003271
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6217
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001731	Metagenome	644	Y
F001897	Metagenome / Metatranscriptome	620	Y
F032155	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100327112	F001731	N/A	MSVFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYANLELINLDQSNVAIEINYGLTIELQDSTATFVPIFGGSVVEVGIAVAEVGSVAYAQRIKIIALGALSRLPKALTDGVLSQDFDGDQILTILTDLLINSWNEVPAALQWQTYEPTEQWQNAQNTGLGEIDTPGNYELAQRSSSRTDVYSLVAALATSGLGYIYESATGQISYADSTHRSTYLATNSYVDLTANHAIAPGLSVQQRAGDVRNDITIKYGQNSTSETSANDPDSIAEFGKLSQIFTTTIKHQADAEDQADFYLSLRSYPQFNFNDFTFELTNPELDDVDRDALINIFMGMPTRITNLPLNMAAGTFLGFVEGWTWRAAYNSVALTAIISPLAFSLQAMQWQDVAIAEQWNTISGSLVWADALVVA
Ga0208975_10032712	F000903	AGGA	MIAAIQHCHDKSANHSSRIVKDISWFAYVAQMGESMAAEMVVAKRLGYDYTPGITWDKSKADVGDHIEVKWSINPASNLWIQESDRHDRDIAVLVTGSSPNMKIMGWMPVVIAKKPRYRNPSQNNWSVPQINLQPIETLQRSNYAHSIV
Ga0208975_10032713	F000403	GGAG	MSDYMEIINPQTRIARLYFNGEVVEEYKVEQCDKCSKLTKFDAFGYQIGYDKTEKIIWFCGDCR
Ga0208975_10032714	F001897	N/A	MDNYEGNKERTDRWLATFPKGRLEAHIIEFNAEKGYVLVQAKAWRSQTETEPAGIDYAYGYLAAYPDKMKRWMVEDTVTSALMRVMALVMGGAEKATQEVMTLVKTETPAADYDYWTTKHGDVPSYQTSAEAEAAGTPSFGSSEDAWVPNAVPTCSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGNWEPQV
Ga0208975_10032716	F032155	N/A	MSVGEWTAVGGFVIAILAAVYSSMKIIIKAVMSELLPNGGSSMKDQISRIEARLDYLYTQLIEKQSNTP