NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1002130

Scaffold Ga0208975_1002130


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1002130 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7952
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009147Metagenome / Metatranscriptome322N
F009603Metagenome / Metatranscriptome315N
F028809Metagenome190N
F076018Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10021301F009147N/AMAVQADISTEYSMGREGFALVTTTAAQTGNWAGLIPTEPTVFTSITGYQISGTWTSKTIPAGLPLVGNITGFQISSGSVVAFNARA
Ga0208975_10021305F009603N/AVFTYTVATKRSYLRTTYASKAALTLLEALTAKLTVSANSMESGNVVRSTSSSDVSVEFAEPGKGTAAPIEMLQMWESLLTDYDYAVTLLAGDAIPSPTDLQIYNKMLTAVLVSTTRYYADFTQFRREATTRMS
Ga0208975_10021307F028809N/AVEILNCQKPAGIESLRQNRIAIKAIERQTGLEFLSISDQEPSRIDGFIFDPFKGIITGIYEVKTRSYGLHKLQTTFGNEWMISWSKIQAALEVTRRTKLPFYGVLHLLDDNIVMMVEIFNRNASWAANHKVEDRLVNGIKDRMALINMATAMQYKMSQLF
Ga0208975_10021309F076018N/AGDRAGPIILRERTCYCSTNPMSLSTDYLLLNIGHSTLKWHLDRIKSGSFTIDQVAMFYAPDPKKSVYKTVTRGLEELVKMKPENLPIQLR

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