Scaffold Ga0208975_1001692

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1001692
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9120
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F018719	Metagenome	233	Y
F039482	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100169210	F011669	GGAGG	MDDDDDYELANLMHLIATVILVLFAVTGIAGLAGYFWEML
Ga0208975_100169211	F039482	AGAAGG	MSDRLELTEHTVFILNGIKLLPHYTLPVFVTPGHTRTTPLKTWTVEELKDAGAVESSAFLWPRHTLASGGSNG
Ga0208975_100169212	F004450	GGA	MNWVAAALVALVMSTAYLLDGPSEHEARVDTVEEKIQKLCGENAGWKLLDDGSIQCFTHRGFKTKKVQL
Ga0208975_10016924	F018719	N/A	MTPTFNTWDRATLDKFALEAYLRLQQQQDQLEQLRGDLRNAIEAYRALNKGSSA