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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027659 Open in IMG/M |
| Scaffold ID | Ga0208975_1001438 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10085 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (29.17%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011074 | Metagenome | 295 | N |
| F019816 | Metagenome | 227 | Y |
| F025481 | Metagenome | 201 | Y |
| F032653 | Metagenome | 179 | N |
| F033030 | Metagenome / Metatranscriptome | 178 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208975_100143812 | F033030 | N/A | MEQKKWSAGAWKKTTAKGEVINFTINDVRYSMWVNAYKTEDKQPDFKIYINDFKPKEDTEGLPF |
| Ga0208975_100143813 | F019816 | N/A | MRELIPFERQMLLAEVYHYAWYNEDAYADLLLFIEKYQNLLDKPVFLTPINNNDTETTNLEPLAFGQNIDTNPGSNEI |
| Ga0208975_100143818 | F025481 | N/A | MTHLTTYQMFQYQRYGNILIDGSRSTSNPYDPALLPKNYDYEDDDYTFTRWVENNAELELLKTEHYED |
| Ga0208975_100143824 | F032653 | N/A | KRYDSTGTTKIDSVRLTFYDSVTKIIEKEQIFTKEVTIYDTIRVTKDSIIVVPKIVTKWVYQTKEKETDNSLVKKDTIAFNRTESTQISIVDKNKVSTANNFWKALIGLIIAIVLILAYWNRLWK |
| Ga0208975_10014389 | F011074 | AGCAG | MQLVGINNPGDVKLAILEDWIRTEYGNFTINEIKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNSTGIKKWTKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTESWLKNQARAVAVALFFDLQIANNKTSFK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |