Scaffold Ga0208975

Basic Information
Taxon OID	3300027659 Open in IMG/M
Scaffold ID	Ga0208975_1001142 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027659 Open in IMG/M

Scaffold ID

Ga0208975_1001142 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11618
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (31.58%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11618

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (31.58%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F020694	Metagenome / Metatranscriptome	222	N
F046247	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100114212	F046247	N/A	MIILPNEQGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSVLFVGTKDECEAEIARLGLVDVSAQGNDNGLDLHADA
Ga0208975_100114215	F020694	N/A	MLDIFTNDLAAMLDELPLAVTFGERNFLANRTTYRRDNSLADGGFMDSASMTITAVYDAFVQTISLGDVLVIGGRRFRVTSAELSQDAVSVDFSLEDINK
Ga0208975_100114216	F008495	N/A	MAEYHGLFAMVDYCKPLYPQNDHSGFDRIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKDINRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVITAAHQVANGRPVLCAGKAAHGMAEFETIEYMCAYIRDANEVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRVERKF
Ga0208975_10011428	F009267	N/A	MKKNKDNELEKDDEILRIQAMEDGPKIVNGRTLRPITALTISWMQRNEVFSGNMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIENNMIHHLEISAMTDAMNAAFELYNASATESKAGSGSGN
Ga0208975_10011429	F011222	N/A	MDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENSKGQDASQVYRQMTKEGDELEEKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208975_1001142

Overview

Ecosystem & Geography

Associated Families

Sequences