Scaffold Ga0208975_1000894

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000894
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13474
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F011284	Metagenome	292	N
F023833	Metagenome	208	Y
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100089414	F011284	AGCAG	MTSEQGVEKATQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEEHGGTKLWEMPSVKLVENAIEEATDQLTYLLTLRSQMHIVMELAREGCTDETLTNPRARECCHLIYTTLTGQSKPPL
Ga0208975_100089421	F093506	N/A	MATTIISNISEFDFEPDIITDNGRDGITAFQFSVVGSFSALNSNFSLDQVLTGVPDQPPGNFRVVRRNMSHIAGNTSDGLYRLQVSAEGGTGDNSLFILETSYQYQREIVSGFVQTIQLDISVNYICEWLSPTVTITTNSPTEDVTAVQERVRGLVASQDVQIIRNKPDRSAVIGTVQYPVFGPGIDVNAINIVGSSVENAGGLFRVRASATKGQMQLSL
Ga0208975_10008944	F023833	AGGA	MKSHSELIQDIINDAMRKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLTDE
Ga0208975_10008949	F005846	N/A	MTSFPLPARPVASAVPASHKEFAKRTSIEGKLNGWCGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVHCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPFISKPSYCSYEWQKQRIRS