Scaffold Ga0208975_1000823

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000823
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14176
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031407	Metagenome / Metatranscriptome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F051740	Metagenome / Metatranscriptome	143	N
F060725	Metagenome	132	N
F064518	Metagenome	128	N
F090088	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100082311	F090088	AGG	MEDKESLGKKVFLEFYSNFILDDEIEETGRVFYLAQKASMIHLKLIRGILQNDEYIINMAYLKDVINKIKI
Ga0208975_100082312	F060725	N/A	MIKLFIGGQEVDLNQDEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKAQLEGADLQAINSGFVASNFKVSLIGNNADWFADVGNTLVRDLGWDDIEINTTNVKTNYDPLTSEHCYILMKWKAWENETFIVNNEMTPAIFVWQVLEKAFLNRGYQLNSIFKTDPFNRLIIPMGLELGADYLNDFVNLRASIPSPSLLSNSNSSPILITFTDETTSPNFDTGGNYVSGVYTVPITATYTLKAELNIANTILVPTPTDEVLVGWEINGVFEEGEDLGQEPSFDDSVIIEFITDLVEGDLVRFVVKHNNCGFLMGLNGSIEIIGSKAIFETGRTFDLQYVIPISWYVRDVIADLTTIFNLAWETNVLSKQVYAYPKDDYTLRYRADATGAISLTTFEGFFKGSDKYDLNTRDVEGSDFQILDGYKSSQVLAYSTDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGVEFIYTKFFAKTIHISDVDITSGGIYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGYIRLYDDTSSASSAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYTNVMQGIFKTFHLQTYKRIELGKVYTTFAKLKPKDITQLSFRRKGIIGSSNFIIQSIEYNPKSNSPAKTVLLYDEKPNVNDLTKVSNTITLAGSTPQSGTVTGSGSGLVGANGASVNIQLSYTPFINSMTNVLVLPVNSGITQVSNTNANVLVFQNGQKLIPTIQYIIGGSTIGINVNTHYDGANYEVVVNGVTKG
Ga0208975_100082316	F064518	N/A	VAESGLFNLTGFTPMESAEKAKLYQVFQYLASKAAEEKVIDEISKAKK
Ga0208975_100082317	F034112	AGGAG	MVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPEHPKVELEAIQYMNERDAVYQKILPYAKKLKVDSKNVQQINLVYDLGKILQEKEVKDNVRRFLPSLIDQWNELDKQLTTRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYGKIMNAINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPEGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYTLDLQTSMLQRAMENLN
Ga0208975_100082318	F031407	N/A	MTDKEKALIIIDLIEKITQEIIDKPMQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPIVSHAKAEPIPFIPTTTETNGDLLADNIPVVTKKARRR
Ga0208975_10008232	F051740	N/A	MIVRDKSKLMIYVGNDPTGKAGILKKAIGNFTQAELRGWHSVNPASVSQHVIYTPEKNTYEPSQENDSSSTEQD