Scaffold Ga0208975_1000813

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000813
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14307
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002044	Metagenome / Metatranscriptome	599	Y
F004599	Metagenome / Metatranscriptome	431	N
F006539	Metagenome / Metatranscriptome	370	Y
F042333	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100081310	F000468	AGTAGG	MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYLQITFVALTGQTLPFDINDSLSLQVKDTSAAYVNIFGGDITDITVSVGATGSIATVIQYTVLAMGSLVKLAKELYSGTISQDEDGNQIYDLLSSVLLGTWNDVPAATTWAGYDATETWANALNLGLGEIDQPGLYTMENRAAETDTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQNYLLTNGYVDLSANHALGQGLSTITRSGDIRNDVAINYGNNFGSQETATSATSIATYGYKAESINSVLHSAVDAQAVADRYIAQRAFPLPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPDQISGGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPITESWNTLSNTLTWEYATIVA
Ga0208975_100081316	F002044	N/A	MANTRKPIKRKKINRRVVRHTPDPTKIDAHYIALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD
Ga0208975_100081318	F006539	AGG	MYAQIACVYVGSDMIETTTPWIWLYCMLGIVIGYGIVITIKENAFQSGYWKGRKDGYDMHRRITDTKRDQVFDYDKN
Ga0208975_100081320	F004599	GGAGG	MAFNLADYEDVATLNKWFILNFPSGRSDISVISHDAVNGYILVQATLWRDSKDEQPCVSNIAFGSRESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVNDEPIKNIYGRSGNSQVIEMALRKSFADDAKPASEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYFGYVCSAPKGEQCNAKWAVTAANGSWFFREEE
Ga0208975_100081323	F042333	GAG	MDGYKAADGFRVYQCLKCCAIGTKNLAEATDTQEPVIRCEQCGSWQFVDQQCHTCALIGA
Ga0208975_10008135	F001834	N/A	MPNQTILEQIRTPLATALSSVAGNVYAFVPETVIPPAVVVVPDSPYLEFETISKSNIRAKVNFTISVAVAYNSNPASLDNIEQLVISVLAVIPTGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV